Discovery of Potent, Highly Selective, and In Vivo Efficacious, Allosteric MALT1 Inhibitors by Iterative Scaffold Morphing

J Med Chem. 2020 Dec 10;63(23):14576-14593. doi: 10.1021/acs.jmedchem.0c01245. Epub 2020 Nov 30.

Abstract

MALT1 plays a central role in immune cell activation by transducing NF-κB signaling, and its proteolytic activity represents a key node for therapeutic intervention. Two cycles of scaffold morphing of a high-throughput biochemical screening hit resulted in the discovery of MLT-231, which enabled the successful pharmacological validation of MALT1 allosteric inhibition in preclinical models of humoral immune responses and B-cell lymphomas. Herein, we report the structural activity relationships (SARs) and analysis of the physicochemical properties of a pyrazolopyrimidine-derived compound series. In human T-cells and B-cell lymphoma lines, MLT-231 potently and selectively inhibits the proteolytic activity of MALT1 in NF-κB-dependent assays. Both in vitro and in vivo profiling of MLT-231 support further optimization of this in vivo tool compound toward preclinical characterization.

MeSH terms

  • Animals
  • Antineoplastic Agents / chemical synthesis
  • Antineoplastic Agents / pharmacology
  • Antineoplastic Agents / therapeutic use
  • Caspase Inhibitors / chemical synthesis
  • Caspase Inhibitors / pharmacology
  • Caspase Inhibitors / therapeutic use*
  • Drug Discovery
  • Female
  • Humans
  • Immunity, Humoral / drug effects
  • Male
  • Mice, Inbred BALB C
  • Molecular Structure
  • Mucosa-Associated Lymphoid Tissue Lymphoma Translocation 1 Protein / antagonists & inhibitors*
  • Neoplasms / drug therapy*
  • Pyrazoles / chemical synthesis
  • Pyrazoles / pharmacology
  • Pyrazoles / therapeutic use
  • Pyrimidines / chemical synthesis
  • Pyrimidines / pharmacology
  • Pyrimidines / therapeutic use
  • Rats, Sprague-Dawley
  • Structure-Activity Relationship
  • T-Lymphocytes / drug effects
  • Urea / analogs & derivatives*
  • Urea / pharmacology
  • Urea / therapeutic use*
  • Xenograft Model Antitumor Assays

Substances

  • Antineoplastic Agents
  • Caspase Inhibitors
  • Pyrazoles
  • Pyrimidines
  • Urea
  • MALT1 protein, human
  • Malt1 protein, mouse
  • Mucosa-Associated Lymphoid Tissue Lymphoma Translocation 1 Protein